Scripts

Data sets

Lab recipes

Other resources

Quick Guide to Build De-novo Assemblies. This is a pipeline that you can use to pre-process, analyze and reconstruct de-novo assemblies using RNA-Seq data. It has been written by Santiago Montero-Mendieta and it is located on GitHub.

Montero-Mendieta S, Grabherr M, Lantz H, De la Riva I, Leonard JA, Webster MT, Vilà C. (2017) A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog. PeerJ 5:e3702 Paper

Scripts for genotype simulation

used in Sanchez-Donoso I, Huisman J, Echegaray J, Puigcerver M, Rodríguez-Teijeiro JD, Hailer F, Vilà C (2014) Detecting slow introgression of invasive alleles in an extensively restocked game bird. Frontiers in Ecology and Evolution 2: 00015. Link
Genotype data set available from the Dryad Digital Repository.

Quail genotype data set

from the article Sanchez-Donoso I, Rodríguez-Teijeiro JD, Quintanilla I, Jiménez-Blasco I, Sardà-Palomera F, Nadal J, Puigcerver M, Vilà C (2014) Influence of game restocking on the migratory behavior of the common quail (Coturnix coturnix). Evolutionary Ecology Research 16: 493-504. Paper

Genotypes of breeding Common quails (Coturnix coturnix) and offspring from Northeast Spain

from the article Sanchez-Donoso I, Vilà C, Puigcerver M, Rodríguez-Teijeiro JD. Mate guarding and male body condition shape male fertilization success and female mating system in the Common Quail. Animal Behaviour, in press.

Nucleic Acid Preservation (NAP) Buffer's lab recipe

from Camacho-Sanchez M, Burraco P, Gomez-Mestre I, Leonard JA (2013) Preservation of RNA and DNA from mammal samples under field conditions. Molecular Ecology Resources 13: 663-73. Paper

ConGRESS resources. Databases on experts, scientific publications, simulation and decision tools for species conservation.

ConGRESS is a collaborative project that provides information and resources for biodiversity managers and policy makers in the nature conservation sector to encourage the use of genetic data on species and populations studies in biodiversity projects.